3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02412

Details:

PFam ID : PF02412

PFam Domain Description : Thrombospondin type 3 repeat

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 1214

Average sequence length: 30.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02412	A0RWY6_CENSY_189_213	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02412	E6LX12_9ACTO_1423_1465	91.9

Sequence based PCA Plot of the family - PF02412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay