3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02410

Details:

PFam ID : PF02410

PFam Domain Description : Oligomerisation domain

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 1187

Average sequence length: 98.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02410	A8Q3H1_MALGO_336_448	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02410	ATP25_UNCRE_127_288	100

Sequence based PCA Plot of the family - PF02410 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=62 Length=8
Motif3 Start=9 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay