3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02408

Details:

PFam ID : PF02408

PFam Domain Description : CUB-like domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 153

Average sequence length: 112.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02408	A8WKK5_CAEBR_226_328	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02408	E3MZ20_CAERE_18_143	100

Sequence based PCA Plot of the family - PF02408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=115 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay