3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02399

Details:

PFam ID : PF02399

PFam Domain Description : Origin of replication binding protein

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 74

Average sequence length: 321.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02399	A6FFB3_9GAMM_227_436	58.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02399	Q0Q8P8_HHV3_12_574	100

Sequence based PCA Plot of the family - PF02399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=741 Length=8
Motif3 Start=55 Length=8
Motif4 Start=347 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay