3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02397

Details:

PFam ID : PF02397

PFam Domain Description : Bacterial sugar transferase

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 2505

Average sequence length: 184.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02397	D6DL41_CLOSC_6_116	61.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02397	Q8VU08_STRPN_1_39	100

Sequence based PCA Plot of the family - PF02397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=73 Length=11
Motif3 Start=23 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay