3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02395

Details:

PFam ID : PF02395

PFam Domain Description : Immunoglobulin A1 protease

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 168

Average sequence length: 430.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02395	E6S058_CAMJC_248_463	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02395	D6HU06_ECOLX_2_511	98.8

Sequence based PCA Plot of the family - PF02395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=689 Length=8
Motif3 Start=1 Length=8
Motif4 Start=232 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay