3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02394

Details:

PFam ID : PF02394

PFam Domain Description : Interleukin-1 propeptide

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 66

Average sequence length: 89.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02394	Q7YS41_PIG_1_45	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02394	Q712K7_ORNAN_1_117	96.9

Sequence based PCA Plot of the family - PF02394 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay