3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02393

Details:

PFam ID : PF02393

PFam Domain Description : US22 like

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 170

Average sequence length: 134.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02393	Q6RXH9_HCMV_101_171	94.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02393	DR6_HHV6Z_37_178	100

Sequence based PCA Plot of the family - PF02393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=138 Length=8
Motif2 Start=128 Length=8
Motif3 Start=12 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay