3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02392

Details:

PFam ID : PF02392

PFam Domain Description : Ycf4

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 181

Average sequence length: 177.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02392	E5SCQ2_TRISP_77_149	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02392	YCF4_EUGGR_17_197	100

Sequence based PCA Plot of the family - PF02392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=11
Motif2 Start=168 Length=11
Motif3 Start=10 Length=11
Motif4 Start=104 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay