3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02389

Details:

PFam ID : PF02389

PFam Domain Description : Cornifin (SPRR) family

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 180

Average sequence length: 134.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02389	C3ZX38_BRAFL_1_79	42.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02389	D2I786_AILME_43_79	96.6

Sequence based PCA Plot of the family - PF02389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay