3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02388

Details:

PFam ID : PF02388

PFam Domain Description : FemAB family

Number of Sequence in 50% Dataset : 218

Number of Sequence in Full Dataset : 553

Average sequence length: 234.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02388	D1WKW4_STAEP_1_67	68.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02388	E7NWM0_TREPH_14_281	100

Sequence based PCA Plot of the family - PF02388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=335 Length=8
Motif2 Start=2 Length=8
Motif3 Start=17 Length=8
Motif4 Start=389 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay