3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02387

Details:

PFam ID : PF02387

PFam Domain Description : IncFII RepA protein family

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 88

Average sequence length: 214.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02387	Q9R873_SALEN_1_105	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02387	A8GLQ5_SERP5_1_283	90.8

Sequence based PCA Plot of the family - PF02387 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay