3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02384

Details:

PFam ID : PF02384

PFam Domain Description : N-6 DNA Methylase

Number of Sequence in 50% Dataset : 546

Number of Sequence in Full Dataset : 2658

Average sequence length: 269.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02384	C3GSZ0_BACTU_70_272	81.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02384	C7N9U2_LEPBD_163_343	99.3

Sequence based PCA Plot of the family - PF02384 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=186 Length=17
Motif2 Start=101 Length=11
Motif3 Start=33 Length=11
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay