3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02380

Details:

PFam ID : PF02380

PFam Domain Description : T-antigen specific domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 33

Average sequence length: 84.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02380	D2MXM0_CAMJE_28_83	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02380	E5AX32_9POLY_74_179	100

Sequence based PCA Plot of the family - PF02380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=29
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay