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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02376
Details:

PFam ID : PF02376

PFam Domain Description : CUT domain

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 180

Average sequence length: 83.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02376A7SHT3_NEMVE_42_12978.7
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02376O16218_CAEEL_133_241100
Sequence based PCA Plot of the family - PF02376 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay