3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02373

Details:

PFam ID : PF02373

PFam Domain Description : JmjC domain, hydroxylase

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 682

Average sequence length: 102.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02373	E9HUF9_DAPPU_31_68	88.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02373	Q4SSC4_TETNG_667_778	100

Sequence based PCA Plot of the family - PF02373 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay