3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02371

Details:

PFam ID : PF02371

PFam Domain Description : Transposase IS116/IS110/IS902 family

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1838

Average sequence length: 82.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02371	C6JDF1_9FIRM_97_178	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02371	Q72NV7_LEPIC_1_91	100

Sequence based PCA Plot of the family - PF02371 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=60 Length=8
Motif2 Start=50 Length=8
Motif3 Start=3 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay