3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02370

Details:

PFam ID : PF02370

PFam Domain Description : M protein repeat

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 34

Average sequence length: 20.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02370	C4SW54_YERFR_1_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02370	B8YGH5_STRSG_364_397	96.9

Sequence based PCA Plot of the family - PF02370 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay