3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02369

Details:

PFam ID : PF02369

PFam Domain Description : Bacterial Ig-like domain (group 1)

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 889

Average sequence length: 95.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02369	C4SW54_YERFR_1_53	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02369	E0WSJ2_9ENTR_171_283	100

Sequence based PCA Plot of the family - PF02369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=39 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay