3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02368

Details:

PFam ID : PF02368

PFam Domain Description : Bacterial Ig-like domain (group 2)

Number of Sequence in 50% Dataset : 823

Number of Sequence in Full Dataset : 2313

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02368	D4L7P4_9FIRM_260_386	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02368	D4L7P4_9FIRM_404_451	99.4

Sequence based PCA Plot of the family - PF02368 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=43 Length=8
Motif3 Start=20 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay