3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02365

Details:

PFam ID : PF02365

PFam Domain Description : No apical meristem (NAM) protein

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 880

Average sequence length: 124.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02365	F2E8I6_HORVD_71_198	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02365	A2ZB85_ORYSI_234_337	99.8

Sequence based PCA Plot of the family - PF02365 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=18
Motif2 Start=36 Length=8
Motif3 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay