3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02364

Details:

PFam ID : PF02364

PFam Domain Description : 1,3-beta-glucan synthase component

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 337

Average sequence length: 474.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02364	E0CTD7_VITVI_861_1039	57.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02364	D5A848_PICSI_1_124	99.4

Sequence based PCA Plot of the family - PF02364 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=114 Length=8
Motif2 Start=103 Length=8
Motif3 Start=71 Length=8
Motif4 Start=7 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay