3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02362

Details:

PFam ID : PF02362

PFam Domain Description : B3 DNA binding domain

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 930

Average sequence length: 96.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02362	D7LCR3_ARALL_130_200	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02362	B8B7V5_ORYSI_120_240	100

Sequence based PCA Plot of the family - PF02362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=79 Length=8
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay