3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02361

Details:

PFam ID : PF02361

PFam Domain Description : Cobalt transport protein

Number of Sequence in 50% Dataset : 666

Number of Sequence in Full Dataset : 2164

Average sequence length: 208.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02361	E3YFF7_LISMO_1_71	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02361	D6TFL9_9CHLR_13_318	100

Sequence based PCA Plot of the family - PF02361 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=325 Length=8
Motif2 Start=310 Length=8
Motif3 Start=368 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay