3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02359

Details:

PFam ID : PF02359

PFam Domain Description : Cell division protein 48 (CDC48), N-terminal domain

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 431

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02359	D3BDZ2_POLPA_7_95	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02359	F1NLN4_CHICK_19_108	100

Sequence based PCA Plot of the family - PF02359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay