3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02358

Details:

PFam ID : PF02358

PFam Domain Description : Trehalose-phosphatase

Number of Sequence in 50% Dataset : 268

Number of Sequence in Full Dataset : 935

Average sequence length: 213.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02358	Q334H7_UROFA_49_265	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02358	D2VJD8_NAEGR_35_307	100

Sequence based PCA Plot of the family - PF02358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=43 Length=8
Motif3 Start=229 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay