3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02357

Details:

PFam ID : PF02357

PFam Domain Description : Transcription termination factor nusG

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 1327

Average sequence length: 96.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02357	E2SQH2_9FIRM_26_87	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02357	D8JQ47_HYPDA_1_108	100

Sequence based PCA Plot of the family - PF02357 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=78 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay