3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02351

Details:

PFam ID : PF02351

PFam Domain Description : GDNF/GAS1 domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 170

Average sequence length: 83.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02351	A7S4I9_NEMVE_58_135	28.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02351	C4QB02_SCHMA_454_539	94.6

Sequence based PCA Plot of the family - PF02351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay