3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02350

Details:

PFam ID : PF02350

PFam Domain Description : UDP-N-acetylglucosamine 2-epimerase

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 1340

Average sequence length: 330.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02350	Q71IH8_LACDL_1_118	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02350	A9A1S6_NITMS_192_422	99.9

Sequence based PCA Plot of the family - PF02350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=25 Length=8
Motif3 Start=224 Length=11
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay