3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02349

Details:

PFam ID : PF02349

PFam Domain Description : Major surface glycoprotein

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 342

Average sequence length: 91.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02349	O25093_HELPY_4_297	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02349	Q6AHU3_PNECA_129_208	99.1

Sequence based PCA Plot of the family - PF02349 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay