3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02348

Details:

PFam ID : PF02348

PFam Domain Description : Cytidylyltransferase

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 1587

Average sequence length: 211.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02348	O25093_HELPY_4_297	87.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02348	C1N3H9_MICPC_18_103	100

Sequence based PCA Plot of the family - PF02348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=14
Motif2 Start=42 Length=11
Motif3 Start=97 Length=11
Motif4 Start=204 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay