3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02347

Details:

PFam ID : PF02347

PFam Domain Description : Glycine cleavage system P-protein

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 1911

Average sequence length: 358.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02347	A7C088_9GAMM_1_204	65

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02347	A6DGQ8_9BACT_14_472	99.8

Sequence based PCA Plot of the family - PF02347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=5 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay