3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02343

Details:

PFam ID : PF02343

PFam Domain Description : TRA-1 regulated protein R03H10.4

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 84

Average sequence length: 124.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02343	E3M9A0_CAERE_23_195	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02343	E3M9A0_CAERE_23_195	100

Sequence based PCA Plot of the family - PF02343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=111 Length=8
Motif3 Start=80 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay