3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02342

Details:

PFam ID : PF02342

PFam Domain Description : Bacterial stress protein

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 748

Average sequence length: 122.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02342	Q6VTC1_9BACT_1_27	56.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02342	D6ARU1_STRFL_103_191	95.5

Sequence based PCA Plot of the family - PF02342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=115 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay