3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02338

Details:

PFam ID : PF02338

PFam Domain Description : OTU-like cysteine protease

Number of Sequence in 50% Dataset : 232

Number of Sequence in Full Dataset : 873

Average sequence length: 121.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02338	A8HRA5_CHLRE_21_160	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02338	A3YB84_9GAMM_773_899	99.7

Sequence based PCA Plot of the family - PF02338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=157 Length=8
Motif4 Start=113 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay