3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02336

Details:

PFam ID : PF02336

PFam Domain Description : Capsid protein VP4

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 10

Average sequence length: 376.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02336	C4P0S3_9VIRU_259_719	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02336	C4P0S3_9VIRU_259_719	100

Sequence based PCA Plot of the family - PF02336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=89 Length=8
Motif3 Start=370 Length=11
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay