3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02335

Details:

PFam ID : PF02335

PFam Domain Description : Cytochrome c552

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 252

Average sequence length: 369.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02335	A7HZQ1_CAMHC_50_553	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02335	C0A3N3_9BACT_1_239	100

Sequence based PCA Plot of the family - PF02335 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay