3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02332

Details:

PFam ID : PF02332

PFam Domain Description : Methane/Phenol/Toluene Hydroxylase

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 225

Average sequence length: 183.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02332	Q2XSA3_9BACT_2_116	60.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02332	D2K2C9_9MYCO_76_312	100

Sequence based PCA Plot of the family - PF02332 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay