3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02330

Details:

PFam ID : PF02330

PFam Domain Description : Mitochondrial glycoprotein

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 256

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02330	B3RYY9_TRIAD_144_240	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02330	B2W8M4_PYRTR_68_307	100

Sequence based PCA Plot of the family - PF02330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=190 Length=8
Motif2 Start=1 Length=8
Motif3 Start=207 Length=8
Motif4 Start=229 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay