3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02325

Details:

PFam ID : PF02325

PFam Domain Description : YGGT family

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 1186

Average sequence length: 77.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02325	B9FVW2_ORYSJ_89_145	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02325	B9FVW2_ORYSJ_89_145	99.8

Sequence based PCA Plot of the family - PF02325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=17
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay