3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02324

Details:

PFam ID : PF02324

PFam Domain Description : Glycosyl hydrolase family 70

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 64

Average sequence length: 598.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02324	E3CNT9_STRVE_1_117	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02324	E3CNT9_STRVE_1_117	100

Sequence based PCA Plot of the family - PF02324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=125 Length=8
Motif3 Start=177 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay