3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02322

Details:

PFam ID : PF02322

PFam Domain Description : Cytochrome oxidase subunit II

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 1007

Average sequence length: 323.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02322	A6Q1A5_NITSB_9_356	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02322	B9P917_POPTR_220_390	100

Sequence based PCA Plot of the family - PF02322 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=363 Length=14
Motif3 Start=21 Length=8
Motif4 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay