3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02321

Details:

PFam ID : PF02321

PFam Domain Description : Outer membrane efflux protein

Number of Sequence in 50% Dataset : 3802

Number of Sequence in Full Dataset : 10968

Average sequence length: 186.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02321	D0I6A4_VIBHO_39_222	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02321	B3QU63_CHLT3_39_226	100

Sequence based PCA Plot of the family - PF02321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=164 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay