3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02320

Details:

PFam ID : PF02320

PFam Domain Description : Ubiquinol-cytochrome C reductase hinge protein

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 152

Average sequence length: 63.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02320	E4XPU7_OIKDI_40_90	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02320	Q23K66_TETTH_17_81	100

Sequence based PCA Plot of the family - PF02320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=18
Motif2 Start=24 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay