3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02319

Details:

PFam ID : PF02319

PFam Domain Description : E2F/DP family winged-helix DNA-binding domain

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 365

Average sequence length: 71.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02319	A2E7Y9_TRIVA_3_40	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02319	D8LZ17_BLAHO_57_126	100

Sequence based PCA Plot of the family - PF02319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=41 Length=8
Motif2 Start=5 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay