3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02317

Details:

PFam ID : PF02317

PFam Domain Description : NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 206

Average sequence length: 148.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02317	F2UEB0_9EUKA_204_390	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02317	O88164_RHIRD_187_356	100

Sequence based PCA Plot of the family - PF02317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=145 Length=11
Motif3 Start=14 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay