3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02316

Details:

PFam ID : PF02316

PFam Domain Description : Mu DNA-binding domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 184

Average sequence length: 106.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02316	B0UVF4_HAES2_8_138	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02316	E0J3P8_ECOLW_23_182	100

Sequence based PCA Plot of the family - PF02316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=21
Motif2 Start=32 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay