3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02315

Details:

PFam ID : PF02315

PFam Domain Description : Methanol dehydrogenase beta subunit

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 27

Average sequence length: 87.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02315	E8LLS2_9GAMM_1_117	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02315	Q7M140_ACEMT_1_68	96.1

Sequence based PCA Plot of the family - PF02315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay