3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02312

Details:

PFam ID : PF02312

PFam Domain Description : Core binding factor beta subunit

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 43

Average sequence length: 139.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02312	E1GAF3_LOALO_3_92	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02312	E4XKR7_OIKDI_1_176	100

Sequence based PCA Plot of the family - PF02312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=91 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay