3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02311

Details:

PFam ID : PF02311

PFam Domain Description : AraC-like ligand binding domain

Number of Sequence in 50% Dataset : 1570

Number of Sequence in Full Dataset : 3637

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02311	D3FQ15_BACPE_45_114	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02311	C6D7N7_PAESJ_21_131	99.6

Sequence based PCA Plot of the family - PF02311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=71 Length=8
Motif2 Start=18 Length=17
Motif3 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay